Class EDPluginExecProcessScript

source code

         object --+                        
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  EDObject.EDObject --+                    
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    EDLogging.EDLogging --+                
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         object --+       |                
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 threading._Verbose --+   |                
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       threading.Thread --+                
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          EDAction.EDAction --+            
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              EDPlugin.EDPlugin --+        
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          EDPluginExec.EDPluginExec --+    
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EDPluginExecProcess.EDPluginExecProcess --+
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                                         EDPluginExecProcessScript

The super class for all EDNA plugins that execute a task using a script. This class manages the process script to be executed:

• Configuration options:
  • execProcessScriptShell : The shell that will execute the script, written into the top line of the script, for example : #!/bin/bash
  • execProcessScriptExecutor : If defined, this command is used for launching the shell. It can be used for example to launch the shell using a grid engine. (Note that the example to launch the shell using a grid engine. (Note that the execProcessScriptExecutor will be replaced by execProcessExecutable)
  • execProcessScriptExecutable : The path to the third-party executable that will be launched in the script.
  • execProcessScriptSetupCCP4 : Path to CCP4 setup file (if required)
  • execProcessScriptVersionString : A string which describes the version of the execProcessScriptExecutable, which should match the version string written into the program log, for example: "Version 7.0.1 for Image plate and CCD data 20th August 2007" (Note that this configuration option will be moved to EDPluginExecProcess)
• The list of compatible 3rd party executable version the plugin should support (should be move up to EDPluginExecProcess)
• The list of pre-execution commands
• The script command line that invokes the executable, which is written into the script (the EDPluginExecProcess command line is not used, but will be in the future: It will consist of the execProcessExecutable and the path to the script file.)
• The list of execution commands for the execProcessScriptExecutable
• The list of post-execution commands
• The script base name (<date>-<random number>-<base name>)
• The script file name
• The script file path
• The standard output log file name
• The error output file log file name
• The poll sleep time for checking if the process has finished (set to 1 s).